Protein ZmMADS5
ZmMADS5 is a protein in the MADS family.
Information
TF Name: ZmMADS5
Species: Maize
TF Family: MADS
Gene Name(Synonym): ZAG5
Uniprot ID: C4JAA4
Subgenome: 2

Protein ZmMADS5

ZmMADS5 is a protein in the MADS family.

Overview of domains present in v5 transcripts
PF00319PF01486
Zm00001eb187330_T005
Zm00001eb187330_T001
Zm00001eb187330_T002
Zm00001eb187330_T003
Zm00001eb187330_T004

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d051465DAPseq no logo sequence fimo position
Zm00001d051465DAPseq no logo sequence fimo position
Zm00001d051465ChIPseq no logo sequence fimo position
Zm00001d051465PChIPseq no logo sequence fimo position

Interactions where ZmMADS5 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmMADS5 is the target  
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There are 56 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb187330_T005 from maize genome v5

Amino Acid Sequence
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MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGVTKTLERYQHCCYNAQDSN
NGALSESQSWYQEISKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRTIQPF
TLMSKVFATFSWTAQERHLGEMNRQLKHKLEAEGCSNYTTLQHAACWPAPGGTIVEHDGATYQVHPPAHSVAMDCEPTLQ
IGYPHHQFPPPEAANNIPRSAATGENNFMLGWVL

MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGVTKTLERYQHCCYNAQDSN
NGALSESQSWYQEISKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRTIQPF
TLMSKVFATFSWTAQERHLGEMNRQLKHKLEAEGCSNYTTLQHAACWPAPGGTIVEHDGATYQVHPPAHSVAMDCEPTLQ
IGYPHHQFPPPEAANNIPRSAATGENNFMLGWVL

MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGVTKTLERYQHCCYNAQDSN
NGALSESQSWYQEISKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRTIQPF
TLMSKVFATFSWTAQERHLGEMNRQLKHKLEAEGCSNYTTLQHAACWPAPGGTIVEHDGATYQVHPPAHSVAMDCEPTLQ
IGYPHHQFPPPEAANNIPRSAATGENNFMLGWVL

MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGVTKTLERYQHCCYNAQDSN
NGALSESQSWYQEISKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRTIQPF
TLMSKVFATFSWTAQERHLGEMNRQLKHKLEAEGCSNYTTLQHAACWPAPGGTIVEHDGATYQVHPPAHSVAMDCEPTLQ
IGYPHHQFPPPEAANNIPRSAATGENNFMLGWVL

MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGVTKTLERYQHCCYNAQDSN
NGALSESQSWYQEISKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRTIQPF
TLMSKVFATFSWTAQERHLGEMNRQLKHKLEAEGCSNYTTLQHAACWPAPGGTIVEHDGATYQVHPPAHSVAMDCEPTLQ
IGYPHHQFPPPEAANNIPRSAATGENNFMLGWVL

MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGVTKTLERYQHCCYNAQDSN
NGALSESQSWYQEISKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRTIQPF
TLMSKVFATFSWTAQERHLGEMNRQLKHKLEAEGCSNYTTLQHAACWPAPGGTIVEHDGATYQVHPPAHSVAMDCEPTLQ
IGYPHHQFPPPEAANNIPRSAATGENNFMLGWVL

MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGVTKTLERYQHCCYNAQDSN
NGALSESQSWYQEISKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRTIQPF
TLMSKVFATFSWTAQERHLGEMNRQLKHKLEAEGCSNYTTLQHAACWPAPGGTIVEHDGATYQVHPPAHSVAMDCEPTLQ
IGYPHHQFPPPEAANNIPRSAATGENNFMLGWVL

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF01486
PF00319
PF01486
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Nucleotide Sequence
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AGCACTTGTGTCCGGCGGCCTTGTG...

GRMZM2G003514_T01 from maize genome v3


Related TFome: pUT3474

Amino Acid Sequence
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MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGVTKTLERYQHCCYNAQDSN
NGALSESQSWYQEISKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRTERHL
GEMNRQLKHKLEAEGCSNYTTLQHAACWPAPGGTIVEHDGATYQVHPPAHSVAMDCEPTLQIGYPHHQFPPPEAANNIPR
SAATGENNFMLGWVL

Nucleotide Sequence
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CTCTCCACTGATATTCCGCTCCTGT...

Zm00001d051465_T001 from maize genome v4

Amino Acid Sequence
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MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGVTKTLERYQHCCYNAQDSN
NGALSESQSWYQEISKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRTERHL
GEMNRQLKHKLEAEGCSNYTTLQHAACWPAPGGTIVEHDGATYQVHPPAHSVAMDCEPTLQIGYPHHQFPPPEAANNIPR
SAATGENNFMLGWVL

Nucleotide Sequence
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AGCACTTGTGTCCGGCGGCCTTGTG...

Zm00001d051465_T002 from maize genome v4

Amino Acid Sequence
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MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGVTKTLERYQHCCYNAQDSN
NGALSESQSWYQEISKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRTIGLP
IYICVFRSLYSSAQQIQPFTLMSKVFATFSWTAQERHLGEMNRQLKHKLEAEGCSNYTTLQHAACWPAPGGTIVEHDGAT
YQVHPPAHSVAMDCEPTLQIGYPHHQFPPPEAANNIPRSAATGENNFMLGWVL

Nucleotide Sequence
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AGCACTTGTGTCCGGCGGCCTTGTG...

Zm00001d051465_T003 from maize genome v4

Amino Acid Sequence
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MMEQVEELRRTERHLGEMNRQLKHKHAACWPAPGGTIVEHDGATYQVHPPAHSVAMDCEPTLQIGYPHHQFPPPEAANNI
PRSAATGENNFMLGWVL

Nucleotide Sequence
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ACTTGTTGTTGCTCAACTGGGCCTC...

Zm00001eb187330_T001 from maize genome v5

Amino Acid Sequence
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MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGVTKTLERYQHCCYNAQDSN
NGALSESQSWYQEISKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQTQLMMEQVEELRRTERHLGEMNR
QLKHKLEAEGCSNYTTLQHAACWPAPGGTIVEHDGATYQVHPPAHSVAMDCEPTLQIGYPHHQFPPPEAANNIPRSAATG
ENNFMLGWVL

Nucleotide Sequence
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GGGAGATGTGGATAGATGGGTGGAT...

Zm00001eb187330_T002 from maize genome v5

Amino Acid Sequence
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MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGVTKTLERYQHCCYNAQDSN
NGALSESQSWYQEISKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRTIQPF
TLMSKVFATFSWTAQERHLGEMNRQLKHKHAACWPAPGGTIVEHDGATYQVHPPAHSVAMDCEPTLQIGYPHHQFPPPEA
ANNIPRSAATGENNFMLGWVL

Nucleotide Sequence
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GGGAGATGTGGATAGATGGGTGGAT...

Zm00001eb187330_T003 from maize genome v5

Amino Acid Sequence
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MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGVTKTLERYQHCCYNAQDSN
NGALSESQSWYQEISKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRTERHL
GEMNRQLKHKHAACWPAPGGTIVEHDGATYQVHPPAHSVAMDCEPTLQIGYPHHQFPPPEAANNIPRSAATGENNFMLGW
VL

Nucleotide Sequence
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GAGACGACCGGACAGGCAGCCACAC...

Zm00001eb187330_T004 from maize genome v5

Amino Acid Sequence
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MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGVTKTLERYQHCCYNAQDSN
NGALSESQSWYQEISKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRTERHL
GEMNRQLKHKLEAEGCSNYTTLQHAACWPAPGGTIVEHDGATYQVHPPAHSVAMDCEPTLQIGYPHHQFPPPEAANNIPR
SAATGENNFMLGWVL

Nucleotide Sequence
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GGCTCTGCTCATCATTATATCGTCG...


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